10

LOCUS AAX29205 367 aa linear SYN 29-MAR-2005

DEFINITION TAR, partial [synthetic construct].

ACCESSION AAX29205

VERSION AAX29205 .1 GI:60653021

DBSOURC Eaccession AY892288.1

KEYWORDS Human ORF project

SOURCE synthetic construct

ORGANISM synthetic construct

... and so on. In particular, you can find information about the authors of the sequence,

journal articles about it and the exact properties of the sequence, that is, from where to

where, for example, the protein, the region and specific binding sites go:

Protein 1..>367

/product="TAR"

Region 30 ..95

/region_name="DSRM"

/note="Double-stranded RNA binding motif. Binding is not

sequence specific but is highly specific for double stranded

RNA. Found in a variety of proteins including dsRNA depen­

dent protein kinase PKR, RNA helicases, Drosophila staufen

protein, E. coli RNase III; cd00048"

/db_xref="CDD:238007"

Site order(30,36..37,78..81,84)

/site_type="other"

/note="dsRNA binding site [nucleotide binding]"

/db_xref="CDD:238007"

Region 159 ..222

/region_name="DSRM"

/note="Double-stranded RNA binding motif. Binding is not

sequence specific but is highly specific for double

stranded RNA. Found in a variety of proteins including

dsRNA dependent protein kinase PKR, RNA helicases,

Drosophila staufen protein, E. coli RNase III; cd00048"

/db_xref="CDD:238007"

Siteorder(159,165..166,208..211,214)

/site_type="other"

/note="dsRNA binding site [nucleotide binding]"

Finally, this is followed by the original sequence as determined by the authors and used

in their research. In the example:

ORIGIN

1 mseeeqgsgt ttgcglpsie qmlaanpgkt pisllqeygt rigktpvydl

lkaegqahqp

1  Sequence Analysis: Deciphering the Language of Life